Wednesday, August 17, 2011

SAM format flag cases

paired end read가 mapping 되었을때,

  • 163 (0x80,0x20,0x2,0x1) 과 83 (0x40,0x10,0x2,0x1)
  • 99 (0x40,0x20,0x2,0x1) 과 147 (0x80,0x10,0x2,0x1)


paired end의 한쪽만 align 되었을 때

  • 73 (0x40,0x8,0x1) 과 133 (0x80,0x4,0x1)
  • 89 (0x40,0x10,0x8,0x1) 과 181 (0x80,0x20,0x10,0x4,0x1)



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